PPN 12/4
04 Friday Dec 2020
Posted in News and Notes
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04 Friday Dec 2020
Posted in News and Notes
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03 Thursday Dec 2020
Posted in News and Notes
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28 Saturday Nov 2020
Posted in News and Notes
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22 Saturday Aug 2020
Posted in Other Columns
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A new, never heard of before study purports to have this COVID bug figured out. The abstract:
The receptor-binding domain (RBD) of the SARS-CoV-2 spike protein plays a crucial role in binding the human cell receptor ACE2 that is required for viral entry. Many studies have been conducted to target the structures of RBD–ACE2 binding and to design RBD-targeting vaccines and drugs. Nevertheless, mutations distal from the SARS-CoV-2 RBD also impact its transmissibility and antibody can target non-RBD regions, suggesting the incomplete role of the RBD region in the spike protein–ACE2 binding. Here, in order to elucidate distant binding mechanisms, we analyze complexes of ACE2 with the wild-type spike protein and with key mutants via large-scale all-atom explicit solvent molecular dynamics simulations. We find that though distributed approximately 10 nm away from the RBD, the SARS-CoV-2 polybasic cleavage sites enhance, via electrostatic interactions and hydration, the RBD–ACE2 binding affinity. A negatively charged tetrapeptide (GluGluLeuGlu) is then designed to neutralize the positively charged arginine on the polybasic cleavage sites. We find that the tetrapeptide GluGluLeuGlu binds to one of the three polybasic cleavage sites of the SARS-CoV-2 spike protein lessening by 34% the RBD–ACE2 binding strength. This significant binding energy reduction demonstrates the feasibility to neutralize RBD–ACE2 binding by targeting this specific polybasic cleavage site. Our work enhances understanding of the binding mechanism of SARS-CoV-2 to ACE2, which may aid the design of therapeutics for COVID-19 infection.
The STUDY, 8/2/2020
ACE2? ACE2? ACE2? Hmmm. Might??? Oh, yeah, it’s the same cellular structure I was writing about here on March 18th, at TPC on March 10th, at FP on March 9th, and back here on March 6th. I’m not a bio-medical pathologist, I just play one on the old blog – five months before the real guys come along. Get it here first, from the latter sources later, or from the MSM never (they say something about “a mask”).
17 Friday Aug 2018
Posted in Other Columns
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25 Wednesday Apr 2018
Posted in The Perrin Lovett Show
A video to round out (or make) an unintentional trio of academic stories today. Please watch:
https://www.youtube.com/watch?v=N2DTvxxFxoY
Perrin Lovett/YouTube.
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Click HERE to get that cool FP t-shirt:
The videos are getting easier and more fun to create. Thanks to all that are signing on. With you good folks, the FP diehards, and our new TPC friends, this thing could take off. Stefan, check that rear view mirror!
More to come.
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